PERTANIKA JOURNAL OF TROPICAL AGRICULTURAL SCIENCE

 

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Isolation and Characterization of Newcastle Disease Virus Subgenotype VII.2/VIIi from Commercial Chicken and Swan in Malaysia

Siti Nor Azizah Mahamud, Sheau Wei Tan, So-Youn Youn, Hyun-Jeong Lee, Ji-Youn Lee, Young-Kuk Kwon, Aini Ideris and Abdul Rahman Omar

Pertanika Journal of Tropical Agricultural Science, Volume 44, Issue 4, November 2021

DOI: https://doi.org/10.47836/pjtas.44.4.10

Keywords: F gene cleavage site, genotype VII, subgenotype VII.2/VIIi

Published on: 2 November 2021

Frequent Newcastle disease (ND) outbreaks in poultry have been reported in Southeast Asia, including Malaysia. However, limited studies have been carried out on detecting the Newcastle disease virus (NDV) from non-poultry birds. In this study, the detections of NDV were carried out using tissues samples from suspected ND cases from commercial chickens and swab samples of non-poultry birds captured in bird sanctuaries. Five samples from commercial chickens and one sample from black swans were found positive for ND. They were classified as velogenic NDV based on the partial sequencing of the fusion (F) gene, which revealed the amino acid motif on the F cleavage site of 112RRQKRF117. In addition, phylogenetic analysis based on partial F gene showed that all NVD isolates are classified as class II genotype VII subgenotype VII.2 (VIIi) and are clustered together with NDVs isolated from chickens in 2017 in Indonesia. This finding indicates the occurrence of subgenotype VII.2 (VIIi) as the fifth panzootic of ND in Malaysia and the importance of the epidemiology of virulent NDV in various avian species.

  • Alexander, D. J. (1988). Newcastle disease diagnosis. In D. J. Alexander (Ed.), Newcastle disease: Developments in veterinary virology (pp. 147-161). Springer. https://doi.org/10.1007/978-1-4613-1759-3_9

  • Alexander, D. J. (2009). Ecology and epidemiology of Newcastle disease. In I. Capua & D. J. Alexander (Eds.), Avian influenza and Newcastle disease (pp. 19-26). Springer. https://doi.org/10.1007/978-88-470-0826-7_2

  • Alexander, D. J., & Senne, D. A. (2008). Newcastle disease, other avian paramyxoviruses, and pneumovirus infections. In Y. M. Saif, A. M. Fadly, J. R. Glisson, L. R. McDougald, L. K. Nolan, & D. E. Swayne (Eds.), Disease of poultry (12th ed., pp. 75-115). Blackwell.

  • Aljumaili, O. A., Yeap, S. K., Omar, A. R., & Aini, I. (2017). Isolation and characterization of genotype VII Newcastle disease virus from NDV vaccinated farms in Malaysia. Pertanika Journal of Tropical Agricultural Science, 40(4), 677-690.

  • Berhanu, A., Ideris, A., Omar, A. R., & Bejo, M. H. (2010). Molecular characterization of partial fusion gene and C-terminus extension length of haemagglutinin-neuraminidase gene of recently isolated Newcastle disease virus isolates in Malaysia. Virology Journal, 7(1), 183. http://www.virologyj.com/content/7/1/183

  • Choi, K. S., Kye, S. J., Kim, J. Y., Damasco, V. R., Sorn, S., Lee, Y. J., Choi, J. G., Kang, H. M., Kim, K. I., Song, B. M., & Lee, H. S. (2013). Molecular epidemiological investigation of velogenic Newcastle disease viruses from village chickens in Cambodia. Virus Genes, 47(2), 244-249. https://doi.org/10.1007/s11262-013-0930-2

  • Choi, K. S., Kye, S. J., Kim, J. Y., To, T. L., Nguyen, D. T., Lee, Y. J., Choi, J. G., Kang, H. M., Kim, K. I., Song, B. M., & Lee, H. S. (2014). Molecular epidemiology of Newcastle disease viruses in Vietnam. Tropical Animal Health and Production, 46(1), 271-277. https://doi.org/10.1007/s11250-013-0475-3

  • Courtney, S. C., Susta, L., Gomez, D., Hines, N. L., Pedersen, J. C., Brown, C. C., Miller, P. J., & Afonso, C. L. (2013). Highly divergent virulent isolates of Newcastle disease virus from the Dominican Republic are members of a new genotype that may have evolved unnoticed for over 2 decades. Journal of Clinical Microbiology, 51(2), 508–517. https://doi.org/10.1128/JCM.02393-12

  • Diel, D. G., da Silva, L. H., Liu, H., Wang, Z., Miller, P. J., & Afonso, C. L. (2012). Genetic diversity of avian paramyxovirus type 1: Proposal for a unified nomenclature and classification system of Newcastle disease virus genotypes. Infection, Genetics and Evolution, 12(8), 1770-1779. https://doi.org/10.1016/j.meegid.2012.07.012.

  • Dimitrov, K. M., Abolnik, C., Afonso, C. L., Albina, E., Bahl, J., Berg, M., Briand, F. X., Brown, I. H., Choi, K. S., Chvala, I., Diel, D. G., Durr, P. A., Ferreira, H. L., Fusaro, A., Gil, P., Goujgoulova, G. V., Grund, C., Hicks, J. T., Joannis, T. M., … Wong, F. (2019). Updated unified phylogenetic classification system and revised nomenclature for Newcastle disease virus. Infection, Genetics and Evolution, 74, 103917. https://doi.org/10.1016/j.meegid.2019.103917

  • Doan, P. T. K., Cahyono, M. I., Rabiei, M., Pandarangga, P., McAllister, M. M., Low, W. Y., Tearle, R., Dharmayanti, I., Tarigan, S., Indriani, R., Ignjatovic, J., & Hemmatzadeh, F. (2020). Genome sequences of Newcastle disease virus strains from two outbreaks in Indonesia. Microbiology Resource Announcements, 9(23), e00205-20. https://doi.org/10.1128/MRA.00205-20

  • Hall, T. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.

  • Herczeg, J., Wehmann, E., Bragg, R. R., Dias, P. T., Hadjiev, G., Werner, O., & Lomniczi, B. (1999). Two novel genetic groups (VIIb and VIII) responsible for recent Newcastle disease outbreaks in Southern Africa, one (VIIb) of which reached Southern Europe. Archives of Virology, 144(11), 2087-2099. https://doi.org/10.1007/s007050050624

  • International Committee on Taxonomy of Viruses. (2019). Virus taxonomy. https://talk.ictvonline.org/taxonomy/

  • Jaganathan, S., Ooi, P. T., Phang, L. Y., Allaudin, Z. N. B., Yip, L. S., Choo, P. Y., Lim, B. K., Lemiere, S., & Audonnet, J. C. (2015). Observation of risk factors, clinical manifestations and genetic characterization of recent Newcastle disease virus outbreak in West Malaysia. BMC Veterinary Research, 11(1), 219. https://doi.org/10.1186/s12917-015-0537-z

  • Kaleta, E. F., & Kummerfeld, N. (2012). Isolation of herpesvirus and Newcastle disease virus from White Storks (Ciconia ciconia) maintained at four rehabilitation centres in northern Germany during 1983 to 2001 and failure to detect antibodies against avian influenza A viruses of subtypes H5 and H7 in these birds. Avian Pathology, 41(4), 383-389. https://doi.org/10.1080/03079457.2012.696312

  • Kaleta, E. F., Alexander, D. J. and Russell, P. H. (1985). The first isolation of the avian pmv‐1 virus responsible for the current panzootic in pigeons?. Avian Pathology, 14(4), 553-557. https://doi.org/10.1080/03079458508436258

  • Ke, G. M., Chuang, K. P., Chang, C. D., Lin, M. Y., & Liu, H. J. (2010). Analysis of sequence and haemagglutinin activity of the HN glycoprotein of Newcastle disease virus. Avian Pathology, 39(3), 235–244. https://doi.org/10.1080/03079451003789331

  • Kraneveld, F. C. (1926). A poultry disease in the Dutch East Indies. Nederlandsch-Indische Bladen voor Diergeneeskunde, 38, 448-450.

  • Le, X. T. K., Doan, H. T. T., & Le, T. H. (2018). Molecular analysis of Newcastle disease virus isolates reveals a novel XIId subgenotype in Vietnam. Archives of Virology, 163(11), 3125-3130. https://doi.org/10.1007/s00705-018-3961-0

  • Liu, M. M., Cheng, J. L., Yu, X. H., Qin, Z. M., Tian, F. L., & Zhang, G. Z. (2015). Generation by reverse genetics of an effective attenuated Newcastle disease virus vaccine based on a prevalent highly virulent Chinese strain. Biotechnology Letters, 37(6), 1287–1296. https://doi.org/10.1007/s10529-015-1799-z

  • Lomniczi, B., Wehmann, E., Herczeg, J., Ballagi-Pordany, A., Kaleta, E. F., Werner, O., Meulemans, G., Jorgensen, P. H., Mante, A. P., Gielkens, A. L. J., & Capua, I. (1998). Newcastle disease outbreaks in recent years in western Europe were caused by an old (VI) and a novel genotype (VII). Archives of Virology, 143(1), 49-64. https://doi.org/10.1007/s007050050267

  • Lu, A., Diao, Y., Chen, H., Wang, J., Ge, P., Sun, X., & Hao, D. (2014). Evaluation of histopathological changes, viral load and immune function of domestic geese infected with Newcastle disease virus. Avian Pathology, 43(4), 325-332. https://doi.org/10.1080/03079457.2014.931928.

  • Miller, P. J., Haddas, R., Simanov, L., Lublin, A., Rehmani, S. F., Wajid, A., Bibi, T., Khan, T. A., Yaqub, T., Setiyaningsih, S., & Afonso, C. L. (2015). Identification of new sub-genotypes of virulent Newcastle disease virus with potential panzootic features. Infection, Genetics and Evolution, 29, 216-229. https://doi.org/10.1016/j.meegid.2014.10.032

  • Putri, D. D., Handharyani, E., Soejoedono, R. D., Setiyono, A., Mayasari, N. L. P. I., & Poetri, O. N. (2017). Pathotypic characterization of Newcastle disease virus isolated from vaccinated chicken in West Java, Indonesia. Veterinary World, 10(4), 438-444. https://doi.org/10.14202/vetworld.2017.438-444

  • Roohani, K., Tan, S. W., Yeap, S. K., Ideris, A., Bejo, M. H., & Omar, A. R. (2015). Characterisation of genotype VII Newcastle disease virus (NDV) isolated from NDV vaccinated chickens, and the efficacy of LaSota and recombinant genotype VII vaccines against challenge with velogenic NDV. Journal of Veterinary Science, 16(4), 447-457. https://doi.org/10.4142/jvs.2015.16.4.447

  • Satharasinghe, D. A., Murulitharan, K., Tan, S. W., Yeap, S. K., Munir, M., Ideris, A., & Omar, A. R. (2016). Detection of inter-lineage natural recombination in avian paramyxovirus serotype 1 using simplified deep sequencing platform. Frontiers in Microbiology, 7, 1907. https://doi.org/10.3389/fmicb.2016.01907

  • Shohaimi, S. A., Raus, R. A., Huai, O. G., Asma Yatim, B. M., Nayan, N., & Yusuf, A. M. (2015). Sequence and phylogenetic analysis of Newcastle disease virus genotype VII isolated in Malaysia during 1999-2012. Jurnal Teknologi, 77(25). https://doi.org/10.11113/jt.v77.6757

  • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., & Kumar, S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28(10), 2731–2739. https://doi.org/10.1093/molbev/msr121

  • Tan, S. W., Aini, I., Omar, A. R., Yusoff, K., Hair-Bejo, M. (2009). Detection and differentiation of Newcastle disease virus using SYBR Green I real-time PCR with novel nucleocapsid gene specific primer. Journal Virology Methods, 160(1-2), 149–156. https://doi.org/10.1016/j.jviromet.2009.05.006

  • Tan, S. W., Ideris, A., Omar, A. R., Yusoff, K., & Hair-Bejo, M. (2010). Sequence and phylogenetic analysis of Newcastle disease virus genotypes isolated in Malaysia between 2004 and 2005. Archives of Virology, 155(1), 63-70. https://doi.org/10.1007/s00705-009-0540-4

  • Toyoda, T., Sakaguchi, T., Imai, K., Inocencio, N. M., Gotoh, B., Hamaguchi, M., & Nagai, Y. (1987). Structural comparison of the cleavage-activation site of the fusion glycoprotein between virulent and avirulent strains of Newcastle disease virus. Virology, 158(1), 242-247. https://doi.org/10.1016/0042-6822(87)90261-3

  • Turan, N., Ozsemir, C., Yilmaz, A., Cizmecigil, U. Y., Aydin, O., Bamac, O. E., Gurel, A., Kutukcu, A., Ozsemir, K., Tali, H.E., Tali, B.H., & Yilmaz, H. (2020). Identification of Newcastle disease virus subgenotype VII. 2 in wild birds in Turkey. BMC Veterinary Research, 16(1), 277. https://doi.org/10.1186/s12917-020-02503-3

  • Umali, D. V., Lopez, A. L. M., Torres, M. I. P., Umandal, M. C., & Katoh, H., (2017). Molecular characterization and phylogenetic analysis of Newcastle disease virus isolated from clinical cases of Newcastle disease in commercial layer farms in the Philippines. Philippines Journal of Veterinary Medicine, 54(1), 17-26. https://doi.org/10.14943/jjvr.69.1.73

  • Vidanović, D., Šekler, M., Ašanin, R., Milić, N., Nišavić, J., Petrović, T., & Savić, V. (2011). Characterization of velogenic Newcastle disease viruses isolated from dead wild birds in Serbia during 2007. Journal of Wildlife Diseases, 47(2), 433-441. https://doi.org/10.7589/0090-3558-47.2.433

  • Wajid, A., Dimitrov, K. M., Wasim, M., Rehmani, S. F., Basharat, A., Bibi, T., Arif, S., Yaqub, T., Tayyab, M., Ababneh, M., Sharma, P & Afonso, C. L. (2017). Repeated isolation of virulent Newcastle disease viruses in poultry and captive non-poultry avian species in Pakistan from 2011 to 2016. Preventive Veterinary Medicine, 142, 1-6. https://doi.org/10.1016/j.prevetmed.2017.04.010

  • Wajid, A., Dundon, W. G., Hussain, T., & Babar, M. E. (2018). Pathotyping and genetic characterization of avian avulavirus-1 from domestic and wild waterfowl, geese and black swans in Pakistan, 2014 to 2017. Archives of Virology, 163(9), 2513-2518. https://doi.org/10.1007/s00705-018-3902-y

  • World Organisation for Animal Health. (2012). Newcastle disease (infection with Newcastle disease virus). https://www.oie.int/fileadmin/Home/eng/Health_standards/tahm/3.03.14_NEWCASTLE_DIS.pdf

  • World Organisation for Animal Health. (2018). Principles of veterinary vaccine production. https://www.oie.int/fileadmin/Home/eng/Health_standards/tahm/1.01.08_VACCINE_PRODUCTION.pdf

  • Xiao, S., Paldurai, A., Nayak, B., Samuel, A., Bharoto, E. E., Prajitno, T. Y., Collins, P. L., & Samal, S. K. (2012). Complete genome sequences of Newcastle disease virus strains circulating in chicken populations of Indonesia. Journal of Virology, 86(10), 5969-5970. https://doi.org/10.1128/JVI.00546-12

  • Xie, Z., Xie, L., Chen, A., Liu, J., Pang, Y., Deng, X., Xie, Z., & Fan, Q. (2012). Complete genome sequence analysis of a Newcastle disease virus isolated from a wild egret. Journal of Virology, 86(24), 13854 –13855. https://doi.org/10.1128/JVI.02669-12

  • Zhang, R., Wang, X., Su, J., Zhao, J., & Zhang, G. (2010). Isolation and analysis of two naturally occurring multi-recombination Newcastle disease viruses in China. Virus Research, 151(1), 45-53. https://doi.org/10.1016/j.virusres.2010.03.015

ISSN 1511-3701

e-ISSN 2231-8542

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JTAS-2297-2021

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