PERTANIKA JOURNAL OF TROPICAL AGRICULTURAL SCIENCE

 

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Pertanika Journal of Tropical Agricultural Science, Volume J, Issue J, January J

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  • Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990). Basic local alignment search tool. Journal of Molecular Biology, 215(3), 403–410. https://doi.org/10.1016/S0022-2836(05)80360-2

  • Bajwa, K., Bishnoi, N. R., Toor, M., Gupta, S., Sharma, P., Kirrolia, A., Kumar, S. S., Sharma, J., & Selvan, S. T. (2018). Isolation, screening, characterization of indigenous oleaginous bacteria: Evaluation of various carbon and nitrogen sources as substrates for single celled oil producing bacteria. Asian Journal of Biotechnology and Bioresource Technology, 3(1), 1–12. https://doi.org/10.9734/AJB2T/2018/39260

  • Benson, D. A., Cavanaugh, M., Clark, K., Karsch-Mizrachi, I., Ostell, J., Pruitt, K. D., & Sayers, E. W. (2018). GenBank. Nucleic Acids Research, 46(D1), D41–D47. https://doi.org/10.1093/nar/gkx1094

  • Brandt, J. F. (1835). Prodromus descriptionis animalium Ab H. Mertensio in orbis terrarum circumnavigatione observatorum [Prodrome of the description of animals observed by H. Mertensio in the circumnavigation of the world]. Harvard University Press.

  • Busse, H.-J., Denner, E. B. M., Buczolits, S., Salkinoja-Salonen, M., Bennasar, A., & Kämpfer, P. (2003). Sphingomonas aurantiaca sp. nov., Sphingomonas aerolata sp. nov. and Sphingomonas faeni sp. nov., air- and dustborne and Antarctic, orange-pigmented, psychrotolerant bacteria, and emended description of the genus Sphingomonas. International Journal of Systematic and Evolutionary Microbiology, 53(5), 1253–1260. https://doi.org/10.1099/ijs.0.02461-0

  • Chakraborty, S. K. (2022). Ocean ecosystem and its multidimensional eco-functionality and significance. In R. Brinkmann (Ed.), The Palgrave handbook of global sustainability (pp. 1–45). Palgrave Macmillan. https://doi.org/10.1007/978-3-030-38948-2_37-1

  • Chu, L., Huang, J., Muhammad, M., Deng, Z., & Gao, J. (2020). Genome mining as a biotechnological tool for the discovery of novel marine natural products. Critical Reviews in Biotechnology, 40(5), 571–589. https://doi.org/10.1080/07388551.2020.1751056

  • Ennas, C., Pasquini, V., Abyaba, H., Addis, P., Sarà, G., & Pusceddu, A. (2023). Sea cucumbers bioturbation potential outcomes on marine benthic trophic status under different temperature regimes. Scientific Reports, 13, 11558. https://doi.org/10.1038/s41598-023-38543-6

  • Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39(4), 783–791. https://doi.org/10.1111/j.1558-5646.1985.tb00420.x

  • Gao, F., Tan, J., Sun, H., & Yan, J. (2014). Bacterial diversity of gut content in sea cucumber (Apostichopus japonicus) and its habitat surface sediment. Journal of Ocean University of China, 13, 303–310. https://doi.org/10.1007/s11802-014-2078-7

  • Gianasi, B. L., Hamel, J.-F., Montgomery, E. M., Sun, J., & Mercier, A. (2021). Current knowledge on the biology, ecology, and commercial exploitation of the sea cucumber Cucumaria frondosa. Reviews in Fisheries Science and Aquaculture, 29(4), 582–653. https://doi.org/10.1080/23308249.2020.1839015

  • Halder, D., & Pahari, S. K. (2020). An overviw of sea cucumber: chemistry and pharmacology of its metabolites. Indian Research Journal of Pharmacy and Science, 7(2), 2277–2298. https://doi.org/10.21276/irjps.2020.7.2.19

  • Hossain, A., Dave, D., & Shahidi, F. (2020). Northern sea cucumber (Cucumaria frondosa): A potential candidate for functional food, nutraceutical, and pharmaceutical sector. Marine Drugs, 18(5), 274. https://doi.org/10.3390/md18050274

  • Hugo, C., Bernardet, J.-F., Nicholson, A., & Kämpfer, P. (2019). Chryseobacterium. Wiley. https://doi.org/10.1002/9781118960608.gbm00301.pub2

  • Jaeger, G. F. (1833). De Holothuriis [Of the Holothuria]. https://www.biodiversitylibrary.org/page/10588969#page/5/mode/1up

  • Kamarudin, K. R., & Rehan, M. M. (2018). Gram-positive bacteria with commercial potential from the gastrointestines of Holothuria (Mertensiothuria) Leucospilota (Timun Laut) and Stichopus Horrens (Gamat) from Malaysian waters. Pertanika Journal of Tropical Agricultural Science, 41(2), 605–620.

  • Kamarudin, K. R., Ngah, N., Hamid, T. H. T. A., & Susanti, D. (2013). Isolation of a pigment-producing strain of Staphylococcus kloosii from the respiratory tree of Holothuria (Mertensiothuria) leucospilota (Brandt 1835) from Malaysian waters. Tropical Life Sciences Research, 24(1), 85–100.

  • Kamarudin, K. R., Rehan, M. M., Noor, H. M., Ramly, N. Z., & Rehan, A. M. (2016). 16S rRNA barcoding technique for species identification of processed sea cucumbers from selected Malaysian markets. Journal of Science and Mathematics Letters, 4, 10–23.

  • Kamarudin, K. R., Usup, G., Hashim, R., & Rehan, M. M. (2015). Sea cucumber (Echinodermata: Holothuroidea) species richness at selected localities in Malaysia. Pertanika Journal of Tropical Agricultural Science, 38(1), 7–32.

  • Kapli, P., Yang, Z., & Telford, M. J. (2020). Phylogenetic tree building in the genomic age. Nature Reviews Genetics, 21, 428–444. https://doi.org/10.1038/s41576-020-0233-0

  • Khalifa, S. A. M., Elias, N., Farag, M. A., Chen, L., Saeed, A., Hegazy, M.-E. F., Moustafa, M. S., Abd El-Wahed, A., Al-Mousawi, S. M., Musharraf, S. G., Chang, F.-R., Iwasaki, A., Suenaga, K., Alajlani, M., Göransson, U., & El-Seedi, H. R. (2019). Marine natural products: A source of novel anticancer drugs. Marine Drugs, 17(9), 491. https://doi.org/10.3390/md17090491

  • Klindworth, A., Pruesse, E., Schweer, T., Peplies, J., Quast, C., Horn, M., & Glöckner, F. O. (2013). Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Research, 41(1), e1. https://doi.org/10.1093/nar/gks808

  • Li, F., Gao, F., Tan, J., Fan, C., Sun, H., Yan, J., Chen, S., & Wang, X. (2016). Characterization and identification of enzyme-producing microflora isolated from the gut of sea cucumber Apostichopus japonicus. Chinese Journal of Oceanology and Limnology, 34, 153–162. https://doi.org/10.1007/s00343-015-4149-z

  • Lipski, A., & Stackebrandt, E. S. (2015). Pseudoxanthomonas. Wiley. https://doi.org/10.1002/9781118960608.gbm01234

  • Liu, H., Xue, C., & Li, Z. (2023). Diversity, distribution, and biology of sea cucumber. In C. Xue (Ed.), Advances in sea cucumber processing technology and product development (pp. 1–20). Springer. https://doi.org/10.1007/978-3-031-16512-2_1

  • Louw, S., & Bűrgener, M. (2020). A rapid assessment of the sea cucumber trade from Africa to Asia. TRAFFIC International.

  • Lukman, A. L., Nordin, N. F. H., & Kamarudin, K. R. (2014). Microbial population in the coelomic fluid of Stichopus chloronotus and Holothuria (Mertensiothuria) leucospilota collected from Malaysian waters. Sains Malaysiana, 43(7), 1013-1021.

  • Marchese, P., Garzoli, L., Gnavi, G., O’Connell, E., Bouraoui, A., Mehiri, M., Murphy, J. M., & Varese, G. C. (2020). Diversity and bioactivity of fungi associated with the marine sea cucumber Holothuria poli: Disclosing the strains potential for biomedical applications. Journal of Applied Microbiology, 129(3), 612–625. https://doi.org/10.1111/jam.14659

  • Mirhendi, H., Diba, K., Rezaei, A., Jalalizand, N., Hosseinpur, L., & Khodadadi, H. (2007). Colony PCR is a rapid and sensitive method for DNA amplification in yeasts. Iran Journal of Public Health, 36(1), 40–44.

  • Mohsen, M., Zhang, L., Sun, L., Lin, C., Liu, S., Wang, Q., & Yang, H. (2020). A deposit-feeder sea cucumber also ingests suspended particles through the mouth. Journal of Experimental Biology, 223(24), jeb230508. https://doi.org/10.1242/jeb.230508

  • Saitou, N., & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4(4), 406-425. https://doi.org/10.1093/oxfordjournals.molbev.a040454

  • Selenka, E. (1867). Beiträge zur anatomie und systematik der Holothurien [Contributions to the anatomy and systematics of Holothuria] (Vol. 17). W. Engelmann Publisher.

  • Solehin, S. N., Kamarudin, K. R., Akashah, N., Rehan, A. M., Bakar, M. A. L. A., Badrulhisham, N. S., Rahman, N. S. A., Akma, U. N., Shahdan, F., Azman, H., Fadzil, S. N. M., Faid, N. H. M., Zaman, N. S. S., Legiman, M. I., Salleh, F. M., & Esa, Y. (2021). Species identification and relationship of sea cucumber species from Pulau Tinggi and Sedili Kechil, Johor based on ossicle shape. Journal of Sustainable Natural Resources, 2(1), 38-45. https://doi.org/10.30880/jsunr.2021.02.01.006

  • Song, Z., Li, H., Wen, J., Zeng, Y., Ye, X., Zhao, W., Xu, T., Xu, N., & Zhang, D. (2020). Consumers’ attention on identification, nutritional compounds, and safety in heavy metals of Canadian sea cucumber in Chinese food market. Food Science and Nutrition, 8(11), 5962–5975. https://doi.org/10.1002/fsn3.1882

  • Tamura, K., Nei, M., & Kumar, S. (2004). Prospects for inferring very large phylogenies by using the neighbor-joining method. Proceedings of the National Academy of Sciences, 101(30), 11030–11035. https://doi.org/10.1073/pnas.0404206101

  • Tamura, K., Stecher, G., & Kumar, S. (2021). MEGA11: Molecular Evolutionary Genetics Analysis version 11. Molecular Biology and Evolution, 38(7), 3022–3027. https://doi.org/10.1093/molbev/msab120

  • Tolon, M. T., Karacalar, U., & Şirin, C. (2021). Observation of Vibrio mediterranei (Pujalte and Garay 1986) / Vibrio shiloi (Kushmaro et al. 2001) bacteria from skin ulcers of the cultured sea cucumber Holothuria poli (Delle Chiaje, 1823). Ege Journal of Fisheries and Aquatic Sciences, 38(3), 393–397. https://doi.org/10.12714/egejfas.38.3.16

  • Wang, J.-H., Zhao, L.-Q., Liu, J.-F., Wang, H., & Xiao, S. (2015). Effect of potential probiotic Rhodotorula benthica D30 on the growth performance, digestive enzyme activity and immunity in juvenile sea cucumber Apostichopus japonicus. Fish and Shellfish Immunology, 43(2), 330–336. https://doi.org/10.1016/j.fsi.2014.12.028

  • Wibowo, J. T., Kellermann, M. Y., Versluis, D., Putra, M. Y., Murniasih, T., Mohr, K. I., Wink, J., Engelmann, M., Praditya, D. F., Steinmann, E., & Schupp, P. J. (2019). Biotechnological potential of bacteria isolated from the sea cucumber Holothuria leucospilota and Stichopus vastus from Lampung, Indonesia. Marine Drugs, 17(11), 635. https://doi.org/10.3390/md17110635

  • Wingfield, L. K., Atcharawiriyakul, J., & Jitprasitporn, N. (2024). Diversity and characterization of culturable fungi associated with the marine sea cucumber Holothuria scabra. PLOS One, 19(1), e0296499. https://doi.org/10.1371/journal.pone.0296499

  • Yang, G., Tian, X., & Dong, S. (2019). Bacillus cereus and rhubarb regulate the intestinal microbiota of sea cucumber (Apostichopus japonicus Selenka): Species-species interaction, network, and stability. Aquaculture, 512, 734284. https://doi.org/10.1016/j.aquaculture.2019.734284

  • Zulfigar, Y., Sim, Y. K., & Aileen Tan, S. H. (2007). The distribution of sea cucumbers in Pulau Aur, Johore, Malaysia. Publications of the Seto Marine Biological Laboratory, 8, 73–86. https://doi.org/10.5134/70908

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